3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10076

Details:

PFam ID : PF10076

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2313)

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 206

Average sequence length: 158.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10076	B6WS14_9DELT_16_218	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10076	B6WS14_9DELT_16_218	100

Sequence based PCA Plot of the family - PF10076 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=18
Motif2 Start=193 Length=11
Motif3 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay