3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10075

Details:

PFam ID : PF10075

PFam Domain Description : COP9 signalosome, subunit CSN8

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 233

Average sequence length: 139.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10075	C4JIH6_UNCRE_74_159	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10075	F0UEA2_AJECA_45_199	99.5

Sequence based PCA Plot of the family - PF10075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay