3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10074

Details:

PFam ID : PF10074

PFam Domain Description : Uncharacterized conserved protein (DUF2285)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 166

Average sequence length: 101.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10074	D4Z5E8_SPHJU_19_160	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10074	D4Z5E8_SPHJU_19_160	100

Sequence based PCA Plot of the family - PF10074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay