3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10070

Details:

PFam ID : PF10070

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2309)

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 180

Average sequence length: 775.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10070	B6AKJ9_9BACT_23_1089	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10070	F2ARQ5_RHOBA_46_998	100

Sequence based PCA Plot of the family - PF10070 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=530 Length=11
Motif2 Start=970 Length=32
Motif3 Start=800 Length=8
Motif4 Start=912 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay