3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10065

Details:

PFam ID : PF10065

PFam Domain Description : Uncharacterized conserved protein (DUF2303)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 56

Average sequence length: 250.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10065	C8PIM1_9PROT_24_251	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10065	Q3IVN0_RHOS4_1_326	100

Sequence based PCA Plot of the family - PF10065 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=160 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay