3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10063

Details:

PFam ID : PF10063

PFam Domain Description : Uncharacterized integral membrane protein (DUF2301)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 83

Average sequence length: 125.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10063	B5SJK8_RALSO_104_191	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10063	Q7NJ12_GLOVI_70_204	100

Sequence based PCA Plot of the family - PF10063 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=2 Length=8
Motif3 Start=126 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay