3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10060

Details:

PFam ID : PF10060

PFam Domain Description : Uncharacterized membrane protein (DUF2298)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 95

Average sequence length: 398.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10060	A7NGR9_ROSCS_752_1353	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10060	A7NGR9_ROSCS_752_1353	92.5

Sequence based PCA Plot of the family - PF10060 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=377 Length=8
Motif2 Start=175 Length=8
Motif3 Start=110 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay