3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10046

Details:

PFam ID : PF10046

PFam Domain Description : Biogenesis of lysosome-related organelles complex-1 subunit 2

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 71

Average sequence length: 94.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10046	A0DE19_PARTE_10_108	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10046	A9V0Z7_MONBE_28_126	100

Sequence based PCA Plot of the family - PF10046 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay