3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10045

Details:

PFam ID : PF10045

PFam Domain Description : Uncharacterized conserved protein (DUF2280)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 51

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10045	A4BLU8_9GAMM_57_95	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10045	Q92VW5_RHIME_21_67	100

Sequence based PCA Plot of the family - PF10045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay