3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10042

Details:

PFam ID : PF10042

PFam Domain Description : Uncharacterized conserved protein (DUF2278)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 78

Average sequence length: 201.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10042	A4C556_9GAMM_1_236	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10042	Q5AT31_EMENI_1_246	100

Sequence based PCA Plot of the family - PF10042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=9 Length=8
Motif2 Start=96 Length=8
Motif3 Start=199 Length=8
Motif4 Start=179 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay