3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10040

Details:

PFam ID : PF10040

PFam Domain Description : Uncharacterized conserved protein (DUF2276)

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 244

Average sequence length: 121.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10040	Q4J7R1_SULAC_134_279	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10040	Q4J7R1_SULAC_134_279	100

Sequence based PCA Plot of the family - PF10040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=31 Length=8
Motif3 Start=102 Length=8
Motif4 Start=132 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay