3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10035

Details:

PFam ID : PF10035

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2179)

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 1131

Average sequence length: 54.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10035	E4RUX5_LEAB4_411_471	29.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10035	E4RUX5_LEAB4_411_471	100

Sequence based PCA Plot of the family - PF10035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay