3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10034

Details:

PFam ID : PF10034

PFam Domain Description : Q-cell neuroblast polarisation

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 100

Average sequence length: 423.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10034	F1L6H4_ASCSU_1_70	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10034	A2AJQ1_MOUSE_58_293	100

Sequence based PCA Plot of the family - PF10034 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=610 Length=8
Motif3 Start=514 Length=8
Motif4 Start=139 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay