3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10033

Details:

PFam ID : PF10033

PFam Domain Description : Autophagy-related protein 13

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 129

Average sequence length: 205.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10033	C5KSY6_9ALVE_42_210	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10033	D5GFQ6_TUBMM_100_345	100

Sequence based PCA Plot of the family - PF10033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=165 Length=14
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay