3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10030

Details:

PFam ID : PF10030

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2272)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 45

Average sequence length: 165.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10030	B2IAA0_XYLF2_75_284	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10030	B2IAA0_XYLF2_75_284	100

Sequence based PCA Plot of the family - PF10030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=135 Length=8
Motif2 Start=7 Length=8
Motif3 Start=102 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay