3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10025

Details:

PFam ID : PF10025

PFam Domain Description : Uncharacterized conserved protein (DUF2267)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 208

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10025	E0JMM7_RHIME_1_44	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10025	E6SGE8_THEM7_2_140	100

Sequence based PCA Plot of the family - PF10025 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay