3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10022

Details:

PFam ID : PF10022

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2264)

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 251

Average sequence length: 327.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10022	Q7RWH8_NEUCR_38_228	70.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10022	D3AB20_9CLOT_34_401	100

Sequence based PCA Plot of the family - PF10022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=35 Length=8
Motif3 Start=53 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay