3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10021

Details:

PFam ID : PF10021

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2263)

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 203

Average sequence length: 139.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10021	D1R9M6_9CHLA_329_435	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10021	E2LK02_MONPE_10_103	100

Sequence based PCA Plot of the family - PF10021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay