3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10020

Details:

PFam ID : PF10020

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2262)

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 121

Average sequence length: 140.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10020	C9MUT0_9FUSO_2_156	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10020	A5TTG1_FUSNP_136_283	100

Sequence based PCA Plot of the family - PF10020 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay