3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10017

Details:

PFam ID : PF10017

PFam Domain Description : Uncharacterized conserved protein (DUF2260)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 412

Average sequence length: 124.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10017	A9SMF1_PHYPA_187_265	63.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10017	E3K1F3_PUCGT_268_403	100

Sequence based PCA Plot of the family - PF10017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=47 Length=8
Motif3 Start=14 Length=8
Motif4 Start=85 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay