3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10014

Details:

PFam ID : PF10014

PFam Domain Description : Biofilm formation and stress response factor

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 180

Average sequence length: 192.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10014	A9IE29_BORPD_1_133	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10014	C3BSA7_9BACI_37_252	100

Sequence based PCA Plot of the family - PF10014 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=103 Length=8
Motif2 Start=174 Length=11
Motif3 Start=194 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay