3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10013

Details:

PFam ID : PF10013

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2256)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 170

Average sequence length: 41.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10013	D8KHT1_LACLN_3_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10013	A3Z4Z9_9SYNE_1_30	100

Sequence based PCA Plot of the family - PF10013 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=11
Motif2 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay