3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10009

Details:

PFam ID : PF10009

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2252)

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 249

Average sequence length: 364.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10009	C3KCH2_PSEFS_1_380	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10009	F0Y2U9_9STRA_467_903	100

Sequence based PCA Plot of the family - PF10009 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=14
Motif2 Start=33 Length=8
Motif3 Start=110 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay