3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10006

Details:

PFam ID : PF10006

PFam Domain Description : Uncharacterized conserved protein (DUF2249)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 285

Average sequence length: 68.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10006	D3S102_FERPA_3_65	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10006	E6PCF9_9ZZZZ_10_90	100

Sequence based PCA Plot of the family - PF10006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=34 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay