3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10005

Details:

PFam ID : PF10005

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2248)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 129

Average sequence length: 312.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10005	D2EVM1_9BACE_159_282	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10005	A6W1M4_MARMS_5_351	100

Sequence based PCA Plot of the family - PF10005 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=8
Motif2 Start=9 Length=11
Motif3 Start=320 Length=11
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay