3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10004

Details:

PFam ID : PF10004

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2247)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 37

Average sequence length: 150.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10004	A8FA37_BACP2_1_156	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10004	Q7N919_PHOLL_1_169	100

Sequence based PCA Plot of the family - PF10004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay