3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10003

Details:

PFam ID : PF10003

PFam Domain Description : Integral membrane protein (DUF2244)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 169

Average sequence length: 134.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10003	B6BV10_9PROT_17_154	75.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10003	D7DLW1_METS0_12_155	100

Sequence based PCA Plot of the family - PF10003 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=8
Motif2 Start=88 Length=8
Motif3 Start=1 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay