3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10000

Details:

PFam ID : PF10000

PFam Domain Description : ACT domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 123

Average sequence length: 70.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10000	A0Z4Y5_9GAMM_1_73	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10000	C0ACC2_9BACT_4_85	100

Sequence based PCA Plot of the family - PF10000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=17
Motif3 Start=20 Length=8
Motif4 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay