3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09999

Details:

PFam ID : PF09999

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2240)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 46

Average sequence length: 131.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09999	Q6L2J6_PICTO_4_150	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09999	Q46CK3_METBF_3_158	100

Sequence based PCA Plot of the family - PF09999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay