3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09996

Details:

PFam ID : PF09996

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2237)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 217

Average sequence length: 114.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09996	Q0FK62_9RHOB_1_74	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09996	Q0UZ06_PHANO_34_116	100

Sequence based PCA Plot of the family - PF09996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=11
Motif2 Start=34 Length=8
Motif3 Start=18 Length=11
Motif4 Start=73 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay