3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09995

Details:

PFam ID : PF09995

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2236)

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 691

Average sequence length: 235.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09995	B1I6Q2_DESAP_131_285	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09995	D3B8I3_POLPA_154_305	99.5

Sequence based PCA Plot of the family - PF09995 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=149 Length=8
Motif3 Start=117 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay