3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09994

Details:

PFam ID : PF09994

PFam Domain Description : Uncharacterized conserved protein (DUF2235)

Number of Sequence in 50% Dataset : 228

Number of Sequence in Full Dataset : 648

Average sequence length: 227.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09994	B1I6Q2_DESAP_131_285	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09994	D1QV56_9BACT_28_215	100

Sequence based PCA Plot of the family - PF09994 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=99 Length=8
Motif2 Start=346 Length=8
Motif3 Start=370 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay