3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09988

Details:

PFam ID : PF09988

PFam Domain Description : Uncharacterized metal-binding protein (DUF2227)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 85

Average sequence length: 160.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09988	A5GWS5_SYNR3_1_94	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09988	A9B0N7_HERA2_2_185	100

Sequence based PCA Plot of the family - PF09988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=61 Length=11
Motif3 Start=153 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay