3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09984

Details:

PFam ID : PF09984

PFam Domain Description : Uncharacterized signal transduction histidine kinase domain (DUF2222)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 85

Average sequence length: 144.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09984	Q47WQ0_COLP3_31_189	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09984	Q47WQ0_COLP3_31_189	100

Sequence based PCA Plot of the family - PF09984 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=17 Length=14
Motif3 Start=51 Length=8
Motif4 Start=124 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay