3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09983

Details:

PFam ID : PF09983

PFam Domain Description : Uncharacterized protein conserved in bacteria C-term(DUF2220)

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 206

Average sequence length: 164.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09983	A1RNS1_SHESW_97_284	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09983	E3DN64_HALPG_169_382	100

Sequence based PCA Plot of the family - PF09983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=31 Length=8
Motif3 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay