3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09981

Details:

PFam ID : PF09981

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2218)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 122

Average sequence length: 87.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09981	A1B2X6_PARDP_7_96	94

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09981	E3J9Q8_FRASU_8_111	100

Sequence based PCA Plot of the family - PF09981 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=90 Length=8
Motif4 Start=12 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay