3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09979

Details:

PFam ID : PF09979

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2213)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 114

Average sequence length: 153.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09979	D2R2S9_PIRSD_39_174	59.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09979	D2TYL1_9ENTR_42_168	100

Sequence based PCA Plot of the family - PF09979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=8
Motif2 Start=88 Length=8
Motif3 Start=118 Length=11
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay