3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09976

Details:

PFam ID : PF09976

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2133)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 369

Average sequence length: 42.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09976	D5VTX8_METIM_4_127	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09976	A5VB07_SPHWW_19_61	100

Sequence based PCA Plot of the family - PF09976 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay