3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09970

Details:

PFam ID : PF09970

PFam Domain Description : Nucleotidyl transferase of unknown function (DUF2204)

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 89

Average sequence length: 149.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09970	A9B818_HERA2_6_171	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09970	D1YZV0_METPS_4_196	98.8

Sequence based PCA Plot of the family - PF09970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=14
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay