3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09969

Details:

PFam ID : PF09969

PFam Domain Description : Uncharacterized conserved protein (DUF2203)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 64

Average sequence length: 117.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09969	A6GDG6_9DELT_4_141	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09969	A6GDG6_9DELT_4_141	100

Sequence based PCA Plot of the family - PF09969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=95 Length=8
Motif3 Start=124 Length=14
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay