3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09968

Details:

PFam ID : PF09968

PFam Domain Description : Uncharacterized protein domain (DUF2202)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 80

Average sequence length: 149.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09968	A3Z7J6_9SYNE_4_82	26.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09968	A1SST8_PSYIN_45_232	100

Sequence based PCA Plot of the family - PF09968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay