3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09967

Details:

PFam ID : PF09967

PFam Domain Description : VWA-like domain (DUF2201)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 256

Average sequence length: 126.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09967	E6U639_ETHHY_415_555	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09967	E6U639_ETHHY_415_555	100

Sequence based PCA Plot of the family - PF09967 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=132 Length=8
Motif2 Start=97 Length=8
Motif3 Start=77 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay