3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09965

Details:

PFam ID : PF09965

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2199)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 54

Average sequence length: 134.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09965	C2YY51_BACCE_14_79	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09965	Q1GGB7_SILST_32_190	100

Sequence based PCA Plot of the family - PF09965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=49 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay