3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09962

Details:

PFam ID : PF09962

PFam Domain Description : Uncharacterized conserved protein (DUF2196)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 149

Average sequence length: 59.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09962	A6SF16_BOTFB_1_41	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09962	E7QSH8_9EURY_3_66	99.3

Sequence based PCA Plot of the family - PF09962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay