3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09960

Details:

PFam ID : PF09960

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2194)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 46

Average sequence length: 502.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09960	C0EYL6_9FIRM_9_395	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09960	E3H9C2_ILYPC_4_593	100

Sequence based PCA Plot of the family - PF09960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=370 Length=8
Motif2 Start=329 Length=8
Motif3 Start=256 Length=8
Motif4 Start=451 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay