3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09959

Details:

PFam ID : PF09959

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2193)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 21

Average sequence length: 473.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09959	F0QWY7_VULM7_6_245	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09959	Q8TQY6_METAC_11_501	100

Sequence based PCA Plot of the family - PF09959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=414 Length=8
Motif2 Start=132 Length=8
Motif3 Start=177 Length=8
Motif4 Start=439 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay