3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09956

Details:

PFam ID : PF09956

PFam Domain Description : Uncharacterized conserved protein (DUF2190)

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 112

Average sequence length: 104.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09956	A4U3B3_9PROT_1_63	52.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09956	D2REK6_ARCPA_1_132	100

Sequence based PCA Plot of the family - PF09956 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay