3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09954

Details:

PFam ID : PF09954

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2188)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 242

Average sequence length: 59.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09954	B4UY31_9ACTO_8_76	31.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09954	A9FCC4_SORC5_7_61	94.6

Sequence based PCA Plot of the family - PF09954 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay