3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09952

Details:

PFam ID : PF09952

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2186)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 71

Average sequence length: 143.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09952	B3EFZ9_CHLL2_193_359	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09952	C6BPI1_RALP1_198_351	100

Sequence based PCA Plot of the family - PF09952 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=127 Length=8
Motif2 Start=5 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay