3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09949

Details:

PFam ID : PF09949

PFam Domain Description : Uncharacterized conserved protein (DUF2183)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 220

Average sequence length: 98.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09949	C9SEE9_VERA1_372_437	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09949	Q6MLP8_BDEBA_70_178	100

Sequence based PCA Plot of the family - PF09949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=80 Length=11
Motif3 Start=59 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay